HTT Chromosome 4
Huntingtin
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What This Gene Does
Huntingtin is a disease gene linked to Huntington's disease, a neurodegenerative disorder characterized by loss of striatal neurons. This is thought to be caused by an expanded, unstable trinucleotide repeat in the huntingtin gene, which translates as a polyglutamine repeat in the protein product. A fairly broad range of trinucleotide repeats (9-35) has been identified in normal controls, and repeat numbers in excess of 40 have been described as pathological. The huntingtin locus is large, spanning 180 kb and consisting of 67 exons. The huntingtin gene is widely expressed and is required for normal development. It is expressed as 2 alternatively polyadenylated forms displaying different relative abundance in various fetal and adult tissues. The larger transcript is approximately 13.7 kb and is expressed predominantly in adult and fetal brain whereas the smaller transcript of approximately 10.3 kb is more widely expressed. The genetic defect leading to Huntington's disease may not necessarily eliminate transcription, but may confer a new property on the mRNA or alter the function of the protein. One candidate is the huntingtin-associated protein-1, highly expressed in brain, which has increased affinity for huntingtin protein with expanded polyglutamine repeats. This gene contains an upstream open reading frame in the 5' UTR that inhibits expression of the huntingtin gene product through translational repression. [provided by RefSeq, Jul 2016]
Gene Info
Gene Group
"Receptor ligands|Armadillo like helical domain containing"
Locus Type
gene with protein product
Location
4p16.3
Ensembl
ENSG00000197386
Associated Conditions (2)
Huntington disease
Lopes-Maciel-Rodan syndrome
Key Variants
RS1065746
Conflicting classifications of pathogenicity
Health Risk
RS1065747
Conflicting classifications of pathogenicity
Health Risk
RS186882443
Conflicting classifications of pathogenicity
Health Risk
RS190593027
Conflicting classifications of pathogenicity
Health Risk
RS2110296349
Likely pathogenic
Health Risk
RS71180116
Likely pathogenic
Huntington disease, Huntington disease, Huntington disease
Health Risk
RS747111841
Likely pathogenic
Health Risk
RS1060505028
Pathogenic
Lopes-Maciel-Rodan syndrome, Lopes-Maciel-Rodan syndrome
Health Risk
RS2110193521
Pathogenic
Health Risk
RS2110269472
Pathogenic
Health Risk
RS745583559
Pathogenic
Health Risk
All Variants (11)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1065746 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS1065747 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS186882443 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS190593027 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS2110296349 | Health Risk | Likely pathogenic | — |
| RS71180116 | Health Risk | Likely pathogenic | Huntington disease, Huntington disease, Huntington disease |
| RS747111841 | Health Risk | Likely pathogenic | — |
| RS1060505028 | Health Risk | Pathogenic | Lopes-Maciel-Rodan syndrome, Lopes-Maciel-Rodan syndrome |
| RS2110193521 | Health Risk | Pathogenic | — |
| RS2110269472 | Health Risk | Pathogenic | — |
| RS745583559 | Health Risk | Pathogenic | — |