GPX4 Chromosome 19
Glutathione peroxidase 4
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What This Gene Does
The protein encoded by this gene belongs to the glutathione peroxidase family, members of which catalyze the reduction of hydrogen peroxide, organic hydroperoxides and lipid hydroperoxides, and thereby protect cells against oxidative damage. Several isozymes of this gene family exist in vertebrates, which vary in cellular location and substrate specificity. This isozyme has a high preference for lipid hydroperoxides and protects cells against membrane lipid peroxidation and cell death. It is also required for normal sperm development; thus, it has been identified as a 'moonlighting' protein because of its ability to serve dual functions as a peroxidase, as well as a structural protein in mature spermatozoa. Mutations in this gene are associated with Sedaghatian type of spondylometaphyseal dysplasia (SMDS). This isozyme is also a selenoprotein, containing the rare amino acid selenocysteine (Sec) at its active site. Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. Transcript variants resulting from alternative splicing or use of alternate promoters have been described to encode isoforms with different subcellular localization. [provided by RefSeq, Dec 2018]
Gene Info
Gene Group
"Selenoproteins|Glutathione peroxidase family"
Locus Type
gene with protein product
Location
19p13.3
Ensembl
ENSG00000167468
Associated Conditions (4)
Inborn genetic diseases
Spondylometaphyseal dysplasia
Sedaghatian type
GPX4-related disorder
Key Variants
RS199515520
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS199787199
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS371892333
Conflicting classifications of pathogenicity
Spondylometaphyseal dysplasia, Sedaghatian type, Inborn genetic diseases
Health Risk
RS1555716575
Likely pathogenic
Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia
Health Risk
RS1599808202
Likely pathogenic
Health Risk
RS1686505064
Likely pathogenic
Health Risk
RS2079656641
Likely pathogenic
Health Risk
RS2512693319
Likely pathogenic
Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia
Health Risk
RS763745871
Likely pathogenic
Spondylometaphyseal dysplasia, Sedaghatian type, GPX4-related disorder
Health Risk
RS1040467710
Pathogenic
Health Risk
RS1599810980
Pathogenic
Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia
Health Risk
RS2079656861
Pathogenic
Health Risk
All Variants (15)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS199515520 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS199787199 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS371892333 | Health Risk | Conflicting classifications of pathogenicity | Spondylometaphyseal dysplasia, Sedaghatian type, Inborn genetic diseases |
| RS1555716575 | Health Risk | Likely pathogenic | Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia |
| RS1599808202 | Health Risk | Likely pathogenic | — |
| RS1686505064 | Health Risk | Likely pathogenic | — |
| RS2079656641 | Health Risk | Likely pathogenic | — |
| RS2512693319 | Health Risk | Likely pathogenic | Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia |
| RS763745871 | Health Risk | Likely pathogenic | Spondylometaphyseal dysplasia, Sedaghatian type, GPX4-related disorder |
| RS1040467710 | Health Risk | Pathogenic | — |
| RS1599810980 | Health Risk | Pathogenic | Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia |
| RS2079656861 | Health Risk | Pathogenic | — |
| RS769967246 | Health Risk | Pathogenic | Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia |
| RS774824204 | Health Risk | Pathogenic | — |
| RS772394824 | Health Risk | Pathogenic/Likely pathogenic | Spondylometaphyseal dysplasia, Sedaghatian type, Spondylometaphyseal dysplasia |