GLIS2 Chromosome 16
GLIS family zinc finger 2
Upload your DNA to see your personal genotypes for variants in GLIS2.
What This Gene Does
This gene is a member of the GLI-similar zinc finger protein family and encodes a nuclear transcription factor with five C2H2-type zinc finger domains. The protein encoded by this gene is widely expressed at low levels in the neural tube and peripheral nervous system and likely promotes neuronal differentiation. It is abundantly expressed in the kidney and may have a role in the regulation of kidney morphogenesis. p120 regulates the expression level of this protein and induces the cleavage of this protein's C-terminal zinc finger domain. This protein also promotes the nuclear translocation of p120. Mutations in this gene cause nephronophthisis (NPHP), an autosomal recessive kidney disease characterized by tubular basement membrane disruption, interstitial lymphohistiocytic cell infiltration, and development of cysts at the corticomedullary border of the kidneys.[provided by RefSeq, Jan 2010]
Gene Info
Gene Group
Zinc fingers C2H2-type
Locus Type
gene with protein product
Location
16p13.3
Ensembl
ENSG00000126603
Associated Conditions (10)
Nephronophthisis
Nephronophthisis 7
GLIS2-related disorder
Malignant tumor of esophagus
Hepatocellular carcinoma
Cervical cancer
Clear cell carcinoma of kidney
Sarcoma
Ovarian serous cystadenocarcinoma
Kidney disorder
Key Variants
RS144447862
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis 7, GLIS2-related disorder
Health Risk
RS150071733
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis 7, Kidney disorder
Health Risk
RS150810544
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis 7, GLIS2-related disorder
Health Risk
RS182526202
Conflicting classifications of pathogenicity
Nephronophthisis 7, GLIS2-related disorder, Nephronophthisis
Health Risk
RS200720013
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis 7, Nephronophthisis
Health Risk
RS2141132961
Conflicting classifications of pathogenicity
Nephronophthisis 7, Nephronophthisis 7
Health Risk
RS371022001
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis 7, Nephronophthisis
Health Risk
RS371341058
Conflicting classifications of pathogenicity
Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7
Health Risk
RS529581775
Conflicting classifications of pathogenicity
Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7
Health Risk
RS569937790
Conflicting classifications of pathogenicity
Nephronophthisis, Nephronophthisis
Health Risk
RS746233571
Conflicting classifications of pathogenicity
Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7
Health Risk
RS750906253
Conflicting classifications of pathogenicity
Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7
Health Risk
All Variants (20)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS144447862 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis 7, GLIS2-related disorder |
| RS150071733 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis 7, Kidney disorder |
| RS150810544 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis 7, GLIS2-related disorder |
| RS182526202 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, GLIS2-related disorder, Nephronophthisis |
| RS200720013 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis 7, Nephronophthisis |
| RS2141132961 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, Nephronophthisis 7 |
| RS371022001 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis 7, Nephronophthisis |
| RS371341058 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7 |
| RS529581775 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7 |
| RS569937790 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis |
| RS746233571 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7 |
| RS750906253 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7 |
| RS751898309 | Health Risk | Conflicting classifications of pathogenicity | GLIS2-related disorder, Nephronophthisis, GLIS2-related disorder |
| RS752036048 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis |
| RS753999588 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis |
| RS767819594 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7 |
| RS769088578 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis 7, Nephronophthisis |
| RS775114398 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis, Nephronophthisis 7, Nephronophthisis |
| RS990927651 | Health Risk | Conflicting classifications of pathogenicity | Nephronophthisis 7, Nephronophthisis, Nephronophthisis 7 |
| RS878855335 | Health Risk | Pathogenic | Nephronophthisis, Nephronophthisis 7, GLIS2-related disorder |