FREM1 Chromosome 9

FRAS1 related extracellular matrix 1
108 variants 108 Health Risk

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What This Gene Does
This gene encodes a basement membrane protein that may play a role in craniofacial and renal development. Mutations in this gene have been associated with bifid nose with or without anorectal and renal anomalies. Alternatively spliced transcript variants encoding different isoforms have been described. PubMed ID 19940113 describes one such variant that initiates transcription within a distinct, internal exon; the resulting shorter isoform (named Toll-like/interleukin-1 receptor regulator, TILRR) is suggested to be a co-receptor of the interleukin 1 receptor family and may regulate receptor function and Toll-like receptor/interleukin 1 receptor signal transduction, contributing to the control of inflammatory response activation. [provided by RefSeq, Apr 2011]
Gene Info
Gene Group
C-type lectin domain containing
Locus Type
gene with protein product
Location
9p22.3
Ensembl
ENSG00000164946
Associated Conditions (19)
FREM1-related disorder
Oculotrichoanal syndrome
Inborn genetic diseases
Sarcoma
BNAR syndrome
Trigonocephaly 2
Rieger anomaly
Irido-corneo-trabecular dysgenesis
Thymoma
Congenital diaphragmatic hernia
Lung cancer
Familial pancreatic carcinoma
Gastric cancer
Ovarian serous cystadenocarcinoma
Thyroid cancer
nonmedullary
1
Uterine corpus endometrial carcinoma
Acute myeloid leukemia
Key Variants
RS113555227
Conflicting classifications of pathogenicity
FREM1-related disorder, FREM1-related disorder
Health Risk
RS1211739234
Conflicting classifications of pathogenicity
Oculotrichoanal syndrome, Oculotrichoanal syndrome
Health Risk
RS1279639790
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS140222993
Conflicting classifications of pathogenicity
FREM1-related disorder, Inborn genetic diseases, FREM1-related disorder
Health Risk
RS143844459
Conflicting classifications of pathogenicity
Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
Health Risk
RS145871721
Conflicting classifications of pathogenicity
Sarcoma, Sarcoma
Health Risk
RS148735553
Conflicting classifications of pathogenicity
Oculotrichoanal syndrome, Oculotrichoanal syndrome
Health Risk
RS180917208
Conflicting classifications of pathogenicity
Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
Health Risk
RS181859461
Conflicting classifications of pathogenicity
Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
Health Risk
RS182527895
Conflicting classifications of pathogenicity
Oculotrichoanal syndrome, Inborn genetic diseases, Oculotrichoanal syndrome
Health Risk
RS182946445
Conflicting classifications of pathogenicity
Oculotrichoanal syndrome, FREM1-related disorder, BNAR syndrome
Health Risk
RS184394424
Conflicting classifications of pathogenicity
Trigonocephaly 2, Rieger anomaly, Irido-corneo-trabecular dysgenesis
Health Risk
All Variants (108)
RSID Category Clinical Significance Conditions
RS113555227 Health Risk Conflicting classifications of pathogenicity FREM1-related disorder, FREM1-related disorder
RS1211739234 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS1279639790 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS140222993 Health Risk Conflicting classifications of pathogenicity FREM1-related disorder, Inborn genetic diseases, FREM1-related disorder
RS143844459 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS145871721 Health Risk Conflicting classifications of pathogenicity Sarcoma, Sarcoma
RS148735553 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS180917208 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS181859461 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS182527895 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Inborn genetic diseases, Oculotrichoanal syndrome
RS182946445 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, BNAR syndrome
RS184394424 Health Risk Conflicting classifications of pathogenicity Trigonocephaly 2, Rieger anomaly, Irido-corneo-trabecular dysgenesis
RS185836404 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS187325866 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, BNAR syndrome, Oculotrichoanal syndrome
RS190325959 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, FREM1-related disorder, Inborn genetic diseases
RS199806592 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS199891537 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Inborn genetic diseases, Oculotrichoanal syndrome
RS200339767 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS200482899 Health Risk Conflicting classifications of pathogenicity FREM1-related disorder, FREM1-related disorder
RS200495440 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Trigonocephaly 2, BNAR syndrome
RS200650442 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Trigonocephaly 2, BNAR syndrome
RS200894045 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS200987019 Health Risk Conflicting classifications of pathogenicity
RS201002953 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS201617511 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Trigonocephaly 2, BNAR syndrome
RS201834847 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Inborn genetic diseases, Oculotrichoanal syndrome
RS202115210 Health Risk Conflicting classifications of pathogenicity
RS367674769 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS368790874 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS369341108 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS369645961 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Inborn genetic diseases, Trigonocephaly 2
RS370198850 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS370556388 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS370943663 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, BNAR syndrome, Trigonocephaly 2
RS371463084 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS371960930 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Trigonocephaly 2, BNAR syndrome
RS373197206 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Trigonocephaly 2, BNAR syndrome
RS373202724 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS373345277 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Trigonocephaly 2, BNAR syndrome
RS373755380 Health Risk Conflicting classifications of pathogenicity FREM1-related disorder, BNAR syndrome, Trigonocephaly 2
RS373880710 Health Risk Conflicting classifications of pathogenicity Trigonocephaly 2, Oculotrichoanal syndrome, BNAR syndrome
RS373880888 Health Risk Conflicting classifications of pathogenicity
RS374311778 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
RS375233918 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, BNAR syndrome, Oculotrichoanal syndrome
RS375476655 Health Risk Conflicting classifications of pathogenicity BNAR syndrome, Trigonocephaly 2, Oculotrichoanal syndrome
RS375631654 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Trigonocephaly 2, Oculotrichoanal syndrome
RS375669260 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS376644135 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, BNAR syndrome, Oculotrichoanal syndrome
RS377668876 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, FREM1-related disorder, Oculotrichoanal syndrome
RS377670533 Health Risk Conflicting classifications of pathogenicity Oculotrichoanal syndrome, Oculotrichoanal syndrome
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