COL4A6 Chromosome X
Collagen type IV alpha 6 chain
Upload your DNA to see your personal genotypes for variants in COL4A6.
What This Gene Does
This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene, alpha 5 type IV collagen, so that the gene pair shares a common promoter. Deletions in the alpha 5 gene that extend into the alpha 6 gene result in diffuse leiomyomatosis accompanying the X-linked Alport syndrome caused by the deletion in the alpha 5 gene. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2013]
Gene Info
Gene Group
Network forming collagens
Locus Type
gene with protein product
Location
Xq22.3
Ensembl
ENSG00000197565
Associated Conditions (4)
COL4A6-related disorder
Nonpapillary renal cell carcinoma
Hearing loss
X-linked 6
Key Variants
RS1006014823
Conflicting classifications of pathogenicity
Health Risk
RS112034997
Conflicting classifications of pathogenicity
COL4A6-related disorder, COL4A6-related disorder
Health Risk
RS113329155
Conflicting classifications of pathogenicity
Health Risk
RS138267158
Conflicting classifications of pathogenicity
COL4A6-related disorder, COL4A6-related disorder
Health Risk
RS139988853
Conflicting classifications of pathogenicity
Nonpapillary renal cell carcinoma, Nonpapillary renal cell carcinoma
Health Risk
RS143895379
Conflicting classifications of pathogenicity
COL4A6-related disorder, COL4A6-related disorder
Health Risk
RS144126512
Conflicting classifications of pathogenicity
Health Risk
RS148636080
Conflicting classifications of pathogenicity
COL4A6-related disorder, COL4A6-related disorder
Health Risk
RS148929548
Conflicting classifications of pathogenicity
Hearing loss, X-linked 6, Hearing loss
Health Risk
RS149989161
Conflicting classifications of pathogenicity
Health Risk
RS150454971
Conflicting classifications of pathogenicity
COL4A6-related disorder, COL4A6-related disorder
Health Risk
RS150896729
Conflicting classifications of pathogenicity
Health Risk
All Variants (36)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1006014823 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS112034997 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS113329155 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS138267158 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS139988853 | Health Risk | Conflicting classifications of pathogenicity | Nonpapillary renal cell carcinoma, Nonpapillary renal cell carcinoma |
| RS143895379 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS144126512 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS148636080 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS148929548 | Health Risk | Conflicting classifications of pathogenicity | Hearing loss, X-linked 6, Hearing loss |
| RS149989161 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS150454971 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS150896729 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS151224348 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS191837837 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS201355021 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS201920507 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS202146097 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS2295919 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS368443205 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS374510545 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS749619355 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS750814219 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, Hearing loss, X-linked 6 |
| RS753586099 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS753972832 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS756303853 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS756582576 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS761681684 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS766360534 | Health Risk | Conflicting classifications of pathogenicity | Hearing loss, X-linked 6, COL4A6-related disorder |
| RS767702464 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS774641536 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS775923727 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS780867365 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS781757715 | Health Risk | Conflicting classifications of pathogenicity | COL4A6-related disorder, COL4A6-related disorder |
| RS2035656072 | Health Risk | Likely pathogenic | Hearing loss, X-linked 6, Hearing loss |
| RS769211787 | Health Risk | Likely pathogenic | COL4A6-related disorder, COL4A6-related disorder |
| RS779748859 | Health Risk | Likely pathogenic | Hearing loss, X-linked 6, Hearing loss |