CNTNAP2 Chromosome 7

Contactin associated protein 2
190 variants 190 Health Risk

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What This Gene Does
This gene encodes a member of the neurexin family which functions in the vertebrate nervous system as cell adhesion molecules and receptors. This protein, like other neurexin proteins, contains epidermal growth factor repeats and laminin G domains. In addition, it includes an F5/8 type C domain, discoidin/neuropilin- and fibrinogen-like domains, thrombospondin N-terminal-like domains and a putative PDZ binding site. This protein is localized at the juxtaparanodes of myelinated axons, and mediates interactions between neurons and glia during nervous system development and is also involved in localization of potassium channels within differentiating axons. This gene encompasses almost 1.5% of chromosome 7 and is one of the largest genes in the human genome. It is directly bound and regulated by forkhead box protein P2, a transcription factor related to speech and language development. This gene has been implicated in multiple neurodevelopmental disorders, including Gilles de la Tourette syndrome, schizophrenia, epilepsy, autism, ADHD and intellectual disability. [provided by RefSeq, Jul 2017]
Gene Info
Gene Group
Contactin associated protein family
Locus Type
gene with protein product
Location
7q35-q36.1
Ensembl
ENSG00000174469
Associated Conditions (28)
Cortical dysplasia-focal epilepsy syndrome
Autism
susceptibility to
15
Inborn genetic diseases
See cases
CNTNAP2-related disorder
Melanoma
Lung cancer
Intellectual disability
Self-limited epilepsy with centrotemporal spikes
Malignant lymphoma
large B-cell
diffuse
Acute myeloid leukemia
Uterine corpus endometrial carcinoma
Chronic lymphocytic leukemia/small lymphocytic lymphoma
Lymphoma
Nonpapillary renal cell carcinoma
Familial cancer of breast
+8 more conditions
Key Variants
RS1057520468
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS1064794765
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS117876038
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS121908445
Conflicting classifications of pathogenicity
Autism, susceptibility to, 15
Health Risk
RS1286176571
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS138481453
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, See cases, Inborn genetic diseases
Health Risk
RS138517537
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS139180845
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
Health Risk
RS141078449
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
Health Risk
RS141439475
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
Health Risk
RS141772824
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
RS141831869
Conflicting classifications of pathogenicity
Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
Health Risk
All Variants (190)
RSID Category Clinical Significance Conditions
RS1057520468 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS1064794765 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS117876038 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS121908445 Health Risk Conflicting classifications of pathogenicity Autism, susceptibility to, 15
RS1286176571 Health Risk Conflicting classifications of pathogenicity Inborn genetic diseases, Inborn genetic diseases
RS138481453 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, See cases, Inborn genetic diseases
RS138517537 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS139180845 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS141078449 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS141439475 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS141772824 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS141831869 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS142331907 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS142434274 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS143226012 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS143286960 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS143856702 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS143877693 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS144003410 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS145162968 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, CNTNAP2-related disorder, Cortical dysplasia-focal epilepsy syndrome
RS146225600 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS146873712 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS1483110052 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS148453565 Health Risk Conflicting classifications of pathogenicity Autism, susceptibility to, 15
RS149185385 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS150607716 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS187552025 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS188140291 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS189731792 Health Risk Conflicting classifications of pathogenicity Autism, susceptibility to, 15
RS199994339 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS200282837 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS200610099 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS200866893 Health Risk Conflicting classifications of pathogenicity Autism, susceptibility to, 15
RS201200400 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS201219937 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, CNTNAP2-related disorder
RS201311931 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Intellectual disability, CNTNAP2-related disorder
RS201326295 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS201934244 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS202095023 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS2485760600 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS368057493 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS368108883 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS369056998 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS369675346 Health Risk Conflicting classifications of pathogenicity Self-limited epilepsy with centrotemporal spikes, Cortical dysplasia-focal epilepsy syndrome, Autism
RS370095062 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS370916766 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Cortical dysplasia-focal epilepsy syndrome
RS371642222 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Intellectual disability, Cortical dysplasia-focal epilepsy syndrome
RS371839994 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Autism, susceptibility to
RS372645983 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, Inborn genetic diseases, Cortical dysplasia-focal epilepsy syndrome
RS372830287 Health Risk Conflicting classifications of pathogenicity Cortical dysplasia-focal epilepsy syndrome, CNTNAP2-related disorder, Cortical dysplasia-focal epilepsy syndrome
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