ALX4 Chromosome 11
ALX homeobox 4
Upload your DNA to see your personal genotypes for variants in ALX4.
What This Gene Does
This gene encodes a paired-like homeodomain transcription factor expressed in the mesenchyme of developing bones, limbs, hair, teeth, and mammary tissue. Mutations in this gene cause parietal foramina 2 (PFM2); an autosomal dominant disease characterized by deficient ossification of the parietal bones. Mutations in this gene also cause a form of frontonasal dysplasia with alopecia and hypogonadism; suggesting a role for this gene in craniofacial development, mesenchymal-epithelial communication, and hair follicle development. Deletion of a segment of chromosome 11 containing this gene, del(11)(p11p12), causes Potocki-Shaffer syndrome (PSS); a syndrome characterized by craniofacial anomalies, cognitive disability, multiple exostoses, and genital abnormalities in males. In mouse, this gene has been shown to use dual translation initiation sites located 16 codons apart. [provided by RefSeq, Oct 2009]
Gene Info
Gene Group
PRD class homeoboxes and pseudogenes
Locus Type
gene with protein product
Location
11p11.2
Ensembl
ENSG00000052850
Associated Conditions (6)
Inborn genetic diseases
Parietal foramina 2
Frontonasal dysplasia with alopecia and genital anomaly
See cases
Craniosynostosis 5
susceptibility to
Key Variants
RS1167159867
Conflicting classifications of pathogenicity
Health Risk
RS144961504
Conflicting classifications of pathogenicity
Inborn genetic diseases, Inborn genetic diseases
Health Risk
RS145166164
Conflicting classifications of pathogenicity
Parietal foramina 2, Inborn genetic diseases, Parietal foramina 2
Health Risk
RS149897209
Conflicting classifications of pathogenicity
Parietal foramina 2, Parietal foramina 2
Health Risk
RS372830230
Conflicting classifications of pathogenicity
Parietal foramina 2, Parietal foramina 2
Health Risk
RS374726657
Conflicting classifications of pathogenicity
Frontonasal dysplasia with alopecia and genital anomaly, Frontonasal dysplasia with alopecia and genital anomaly
Health Risk
RS1085307637
Likely pathogenic
Health Risk
RS1403155983
Likely pathogenic
See cases, See cases
Health Risk
RS746479735
Likely pathogenic
Parietal foramina 2, Parietal foramina 2
Health Risk
RS104894191
Pathogenic
Parietal foramina 2, Parietal foramina 2
Health Risk
RS104894192
Pathogenic
Parietal foramina 2, Parietal foramina 2
Health Risk
RS104894193
Pathogenic
Parietal foramina 2, Parietal foramina 2
Health Risk
All Variants (26)
| RSID | Category | Clinical Significance | Conditions |
|---|---|---|---|
| RS1167159867 | Health Risk | Conflicting classifications of pathogenicity | — |
| RS144961504 | Health Risk | Conflicting classifications of pathogenicity | Inborn genetic diseases, Inborn genetic diseases |
| RS145166164 | Health Risk | Conflicting classifications of pathogenicity | Parietal foramina 2, Inborn genetic diseases, Parietal foramina 2 |
| RS149897209 | Health Risk | Conflicting classifications of pathogenicity | Parietal foramina 2, Parietal foramina 2 |
| RS372830230 | Health Risk | Conflicting classifications of pathogenicity | Parietal foramina 2, Parietal foramina 2 |
| RS374726657 | Health Risk | Conflicting classifications of pathogenicity | Frontonasal dysplasia with alopecia and genital anomaly, Frontonasal dysplasia with alopecia and genital anomaly |
| RS1085307637 | Health Risk | Likely pathogenic | — |
| RS1403155983 | Health Risk | Likely pathogenic | See cases, See cases |
| RS746479735 | Health Risk | Likely pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS104894191 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS104894192 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS104894193 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS104894196 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS104894197 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS1175384200 | Health Risk | Pathogenic | — |
| RS267606653 | Health Risk | Pathogenic | Frontonasal dysplasia with alopecia and genital anomaly, Inborn genetic diseases, Frontonasal dysplasia with alopecia and genital anomaly |
| RS387906325 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS587776614 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS587777700 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS587777701 | Health Risk | Pathogenic | Frontonasal dysplasia with alopecia and genital anomaly, Frontonasal dysplasia with alopecia and genital anomaly |
| RS587777702 | Health Risk | Pathogenic | Parietal foramina 2, Parietal foramina 2 |
| RS869320717 | Health Risk | Pathogenic | Frontonasal dysplasia with alopecia and genital anomaly, Frontonasal dysplasia with alopecia and genital anomaly |
| RS876657391 | Health Risk | Pathogenic | Frontonasal dysplasia with alopecia and genital anomaly, Frontonasal dysplasia with alopecia and genital anomaly |
| RS1064795941 | Health Risk | Pathogenic/Likely pathogenic | — |
| RS281865153 | Health Risk | risk factor | Craniosynostosis 5, susceptibility to, Craniosynostosis 5 |
| RS281865154 | Health Risk | risk factor | Craniosynostosis 5, susceptibility to, Craniosynostosis 5 |