ABAT Chromosome 16

4-aminobutyrate aminotransferase
64 variants 64 Health Risk

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What This Gene Does
4-aminobutyrate aminotransferase (ABAT) is responsible for catabolism of gamma-aminobutyric acid (GABA), an important, mostly inhibitory neurotransmitter in the central nervous system, into succinic semialdehyde. The active enzyme is a homodimer of 50-kD subunits complexed to pyridoxal-5-phosphate. The protein sequence is over 95% similar to the pig protein. GABA is estimated to be present in nearly one-third of human synapses. ABAT in liver and brain is controlled by 2 codominant alleles with a frequency in a Caucasian population of 0.56 and 0.44. The ABAT deficiency phenotype includes psychomotor retardation, hypotonia, hyperreflexia, lethargy, refractory seizures, and EEG abnormalities. Multiple alternatively spliced transcript variants encoding the same protein isoform have been found for this gene. [provided by RefSeq, Jul 2008]
Gene Info
Gene Group
Transaminases
Locus Type
gene with protein product
Location
16p13.2
Ensembl
ENSG00000183044
Associated Conditions (3)
Gamma-aminobutyric acid transaminase deficiency
Inborn genetic diseases
ABAT-related disorder
Key Variants
RS10261
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS1057523345
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS112564762
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS1139522
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS1353981722
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS1389255922
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS141279192
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Inborn genetic diseases, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS147226856
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS147765799
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS149855547
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS150914629
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, ABAT-related disorder, Gamma-aminobutyric acid transaminase deficiency
Health Risk
RS201727625
Conflicting classifications of pathogenicity
Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
Health Risk
All Variants (64)
RSID Category Clinical Significance Conditions
RS1383146093 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS1555492932 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS1555494322 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS1567300736 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS1567310537 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS1567312671 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS2549024989 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS2549102675 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS2549115450 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS724159991 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS781555217 Health Risk Pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS1355739310 Health Risk Pathogenic/Likely pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
RS724159990 Health Risk Pathogenic/Likely pathogenic Gamma-aminobutyric acid transaminase deficiency, Inborn genetic diseases, Gamma-aminobutyric acid transaminase deficiency
RS724159992 Health Risk Pathogenic/Likely pathogenic Gamma-aminobutyric acid transaminase deficiency, Gamma-aminobutyric acid transaminase deficiency
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